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spatialdata-notebooks

  • spatialdata-notebooks
  • Tutorials
    • Intro to SpatialData
    • Transformations and coordinate systems
    • Spatial query/subsampling
    • Annotating regions of interest with napari
    • Use landmark annotations to align multiple -omics layers
    • Create SpatialData objects from scratch
    • Working with annotations in SpatialData
    • Filtering SpatialData elements with Table Queries
    • I. Use SpatialData with your data: the SpatialData object.
    • II. Use SpatialData with your data: SpatialElements and tables
    • Integrate/aggregate signals across spatial layers
    • Interchangeability between raster and vector representations
    • Squidpy integration
    • Deep learning example on image tiles
    • Technology focus: 10x Genomics Visium
    • Technology focus: MIBI-TOF
    • Technology focus: MERFISH
    • Technology focus: Visium HD
    • Technology focus: Visium HD (SpaceRanger 4.0)
    • Technology focus: Xenium
    • Technology focus: SpaceM
    • Implicit performance improvements when plotting raster data
    • Raster data and translations (technical topic)
  • Spatial omics datasets
  • References
  • .md

  • spatialdata-notebooks
  • Tutorials
  • Spatial omics datasets
  • Artificial datasets
  • References
  • Opening an issue
  • References

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spatialdata-notebooks

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