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spatialdata-notebooks
spatialdata-notebooks
Tutorials
Transformations and coordinate systems
Deep learning example on image tiles
Spatial query
Annotating regions of interest with
napari
Use landmark annotations to align multiple -omics layers
Integrate/aggregate signals across spatial layers
Squidpy integration
Technology focus: 10x Genomics Visium
Technology focus: MibiTOF
Technology focus: MERFISH
Technology focus: COSMX
Implicit Performance Improvements
Spatial omics datasets
References
.md
.pdf
spatialdata-notebooks
Tutorials
Spatial omics datasets
Artificial datasets
References
References