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spatialdata-notebooks

  • spatialdata-notebooks
  • Tutorials
    • Transformations and coordinate systems
    • Deep learning example on image tiles
    • Spatial query
    • Annotating regions of interest with napari
    • Use landmark annotations to align multiple -omics layers
    • Integrate/aggregate signals across spatial layers
    • Squidpy integration
    • Technology focus: 10x Genomics Visium
    • Technology focus: MibiTOF
    • Technology focus: MERFISH
    • Technology focus: COSMX
    • Implicit Performance Improvements
  • Spatial omics datasets
  • References
  • .md

  • spatialdata-notebooks
  • Tutorials
  • Spatial omics datasets
  • Artificial datasets
  • References
  • References

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spatialdata-notebooks