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spatialdata-notebooks
spatialdata-notebooks
Tutorials
I. Use SpatialData with your data: the SpatialData object.
II. Use SpatialData with your data: SpatialElements and tables
Transformations and coordinate systems
Spatial query
Annotating regions of interest with
napari
Use landmark annotations to align multiple -omics layers
Working with annotations in SpatialData
Integrate/aggregate signals across spatial layers
Squidpy integration
Deep learning example on image tiles
Technology focus: 10x Genomics Visium
Technology focus: MIBI-TOF
Technology focus: MERFISH
Technology focus: CosMx
Technology focus: Visium HD
Technology focus: Xenium
Implicit performance improvements when plotting raster data
Spatial omics datasets
References
.md
.pdf
spatialdata-notebooks
Tutorials
Spatial omics datasets
Artificial datasets
References
References